Scaffold Ga0315912_10001878

Overview

Basic Information

• Taxon OID: 3300032157
• Scaffold ID: Ga0315912_10001878
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23950
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009755	Metagenome / Metatranscriptome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315912_1000187818	F009755	AGGAGG	MSKLATRFTAALVLVMGVSAARLGADRHDVTLAVTMTNDPTSNAIQVYDARTQSWLQTLPAQGKGGVGGNARGIRQYGGEIVAVVNNGSNTVAVFRRHQNGLKFEQLVATTSAPVSIDFGNDHMYVAGATTVDSFVLHGNHVGGLDGTASLELVGGALPPNGSTAQVGVIDERRLLVTLKTDPDPGTVDVVALDHGAISGEAPTAVSAPAGTLTPFGFSVYPDGSALITLAHSSQDGLFRDGTFKTVVAAGQAAPCWSTRIGKYVFTANTGSKTLSRLVATGNNIFIDSPVAATIPGGGPSDIDAARGVLGVIDHGGGQSHLTLFSYNAFGELQAVGSAIVLGIPNANGVAIVPPTDND